Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6875

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15242 and 15243 are separated by 271 nucleotides15243 and 15244 are separated by 478 nucleotides mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328,504 to 329,604 15242 mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329,876 to 331,485 15243 mRNA_6876: 15244 - Hypothetical Protein, at 331,964 to 333,369 15244

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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328,919 + 15242 mRNA_6874 0.38 -0.8
329,097 + 15242 mRNA_6874 0.54 +0.2
329,233 + 15242 mRNA_6874 0.66 -0.8
329,254 + 15242 mRNA_6874 0.68 -1.0
329,394 + 15242 mRNA_6874 0.81 +0.6
329,398 - 15242 mRNA_6874 0.81 -0.6
329,809 - +0.5
329,825 + -0.5
330,073 + 15243 mRNA_6875 0.12 -0.0
330,251 + 15243 mRNA_6875 0.23 -1.2
330,396 - 15243 mRNA_6875 0.32 -0.5
330,527 - 15243 mRNA_6875 0.40 -2.3
330,624 + 15243 mRNA_6875 0.46 -0.1
330,807 - 15243 mRNA_6875 0.58 -0.8
331,264 - 15243 mRNA_6875 0.86 +1.1
331,281 + 15243 mRNA_6875 0.87 +1.1
331,410 + -0.4
331,415 - +0.2
331,554 - -0.5
331,689 - -0.0
331,705 - -1.3
331,846 + -3.1
331,863 - +0.4
331,877 - +0.8

Or see this region's nucleotide sequence