Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6923

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15290 and 15291 are separated by 872 nucleotides15291 and 15292 are separated by 553 nucleotides mRNA_6922: 15290 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 436,165 to 438,557 15290 mRNA_6923: 15291 - Hypothetical Protein, at 439,430 to 443,984 15291 mRNA_6924: 15292 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 444,538 to 446,309 15292

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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438,627 - -0.4
438,782 - -0.4
438,813 + -1.4
439,209 + +0.9
439,432 - -1.4
439,748 + -1.8
439,878 - +0.4
439,947 + 15291 mRNA_6923 0.11 -2.1
439,947 + 15291 mRNA_6923 0.11 -1.6
440,131 + 15291 mRNA_6923 0.15 +0.3
440,771 + 15291 mRNA_6923 0.29 -0.2
440,962 + 15291 mRNA_6923 0.34 -1.2
441,408 - 15291 mRNA_6923 0.43 +0.5
441,422 + 15291 mRNA_6923 0.44 +0.1
441,493 + 15291 mRNA_6923 0.45 -1.4
442,042 - 15291 mRNA_6923 0.57 -1.1
442,193 - 15291 mRNA_6923 0.61 -2.0
442,288 - 15291 mRNA_6923 0.63 +0.4
442,557 + 15291 mRNA_6923 0.69 -2.7
442,587 - 15291 mRNA_6923 0.69 -0.4
443,054 - 15291 mRNA_6923 0.80 -1.4
443,603 - +0.1
443,634 - -1.7
443,757 + -1.8
443,907 - +0.5
443,920 - +0.0
444,077 - -2.6
444,081 - -1.7
444,230 + -2.5
444,243 + -0.8
444,393 - +1.7
444,395 - +0.1
444,400 - -0.6
444,400 - -2.3
444,405 - -1.1
444,418 + -0.5
444,448 + -0.6
444,504 - -0.2
444,505 + -0.6
444,541 + -1.2
444,796 + 15292 mRNA_6924 0.15 +0.5
444,797 + 15292 mRNA_6924 0.15 -0.7

Or see this region's nucleotide sequence