Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7096

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15463 and 15464 are separated by 287 nucleotides15464 and 15465 are separated by 143 nucleotides mRNA_7095: 15463 - Hypothetical Protein, at 871,205 to 873,737 15463 mRNA_7096: 15464 - K16729 CHORDC1, CHP1 cysteine and histidine-rich domain-containing protein 1, at 874,025 to 875,519 15464 mRNA_7097: 15465 - K03064 PSMC6, RPT4 26S proteasome regulatory subunit T4, at 875,663 to 877,708 15465

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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873,506 + +0.9
873,625 - -1.2
873,637 + -1.2
873,776 - +0.8
873,776 - +0.4
873,781 - -1.1
873,793 + +0.5
873,793 + -1.7
873,793 + -0.4
873,794 - -1.7
873,795 + -1.3
873,795 - -1.4
873,809 - -0.5
873,935 - -1.4
874,093 - -2.3
874,640 + 15464 mRNA_7096 0.41 -0.0
874,800 + 15464 mRNA_7096 0.52 -1.0
875,114 + 15464 mRNA_7096 0.73 -0.7
875,234 - 15464 mRNA_7096 0.81 -1.7

Or see this region's nucleotide sequence