Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7117

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15484 and 15485 are separated by 763 nucleotides15485 and 15486 are separated by 307 nucleotides mRNA_7116: 15484 - K04393 CDC42 cell division control protein 42, at 918,589 to 919,535 15484 mRNA_7117: 15485 - K12868 SYF2 pre-mRNA-splicing factor SYF2, at 920,299 to 921,602 15485 mRNA_7118: 15486 - SUPERFAMILY--SSF47954, at 921,910 to 924,528 15486

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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919,302 + 15484 mRNA_7116 0.75 -0.3
919,304 + 15484 mRNA_7116 0.76 -3.0
919,337 + 15484 mRNA_7116 0.79 -1.0
919,451 + -1.4
919,487 - -0.7
919,496 + -0.8
919,515 - -0.8
919,588 + -2.1
919,598 - -1.5
919,623 + +0.2
919,624 + -0.1
919,636 + -0.3
919,790 - -1.8
919,791 + -0.2
919,794 + -0.1
919,800 + -0.3
919,937 - +0.6
919,942 - -2.4
920,082 - +1.3
920,083 + -2.1
920,107 + -0.8
920,108 + +1.4
920,112 - -0.7
920,237 + -1.4
920,238 + +0.6
920,251 + +0.1
920,255 + +1.2
920,546 - 15485 mRNA_7117 0.19 -0.1
921,688 - -0.7
921,713 - -0.9
921,856 - -0.0
921,856 - -0.2
921,857 + -1.0
921,857 - +0.6
921,872 + -1.0
921,874 + -0.5
921,879 - -2.8

Or see this region's nucleotide sequence