Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7121

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15488 and 15489 are separated by 394 nucleotides15489 and 15490 are separated by 422 nucleotides mRNA_7120: 15488 - K01649 leuA 2-isopropylmalate synthase, at 925,673 to 928,023 15488 mRNA_7121: 15489 - PRINTS-Proline rich extensin signature-PR01217,ProSiteProfiles-EH domain profile.-PS50031, at 928,418 to 929,954 15489 mRNA_7122: 15490 - K14791 PWP1 periodic tryptophan protein 1, at 930,377 to 932,524 15490

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
928,041 - +0.4
928,064 + -1.7
928,173 - -0.5
928,174 - +0.0
928,183 - -2.4
928,194 - +0.9
928,360 - -0.4
928,401 - -2.1
928,540 + -0.7
928,545 - -1.5
929,122 - 15489 mRNA_7121 0.46 -2.8
929,239 - 15489 mRNA_7121 0.53 +0.9
929,246 - 15489 mRNA_7121 0.54 -0.0
929,429 + 15489 mRNA_7121 0.66 -0.0
929,684 - 15489 mRNA_7121 0.82 +0.2
929,685 - 15489 mRNA_7121 0.82 -2.0
929,692 + 15489 mRNA_7121 0.83 -2.5
929,818 - +1.4
929,948 - +0.4
929,949 + +1.7
929,975 + -0.3
930,012 - +0.4
930,016 - -0.9

Or see this region's nucleotide sequence