Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7154

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15521 and 15522 are separated by 170 nucleotides15522 and 15523 are separated by 218 nucleotides mRNA_7153: 15521 - Hypothetical Protein, at 1,004,044 to 1,005,448 15521 mRNA_7154: 15522 - Hypothetical Protein, at 1,005,619 to 1,007,584 15522 mRNA_7155: 15523 - Hypothetical Protein, at 1,007,803 to 1,008,291 15523

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,004,637 - 15521 mRNA_7153 0.42 -0.1
1,004,659 + 15521 mRNA_7153 0.44 -1.3
1,004,668 + 15521 mRNA_7153 0.44 -0.2
1,004,791 - 15521 mRNA_7153 0.53 -1.3
1,004,800 + 15521 mRNA_7153 0.54 -0.5
1,004,804 + 15521 mRNA_7153 0.54 -2.6
1,004,887 - 15521 mRNA_7153 0.60 -0.8
1,005,052 - 15521 mRNA_7153 0.72 -0.7
1,005,421 + -0.5
1,005,531 + +1.2
1,005,565 + +0.8
1,005,576 - +0.6
1,005,682 - -3.4
1,005,698 - -4.3
1,005,726 + +1.1
1,005,734 - -0.5
1,005,858 + 15522 mRNA_7154 0.12 -0.9
1,006,611 + 15522 mRNA_7154 0.50 -0.1
1,006,759 - 15522 mRNA_7154 0.58 -1.4
1,006,886 + 15522 mRNA_7154 0.64 -0.0
1,007,332 + 15522 mRNA_7154 0.87 -0.8
1,007,487 + -1.2
1,007,659 - -2.1
1,007,775 - -0.4
1,007,797 - +1.5
1,007,942 - 15523 mRNA_7155 0.28 +0.1
1,008,076 + 15523 mRNA_7155 0.56 -1.1
1,008,082 + 15523 mRNA_7155 0.57 -1.4
1,008,216 - 15523 mRNA_7155 0.84 -0.2
1,008,217 + 15523 mRNA_7155 0.85 -1.5
1,008,235 + 15523 mRNA_7155 0.88 -0.3
1,008,344 - -1.7
1,008,352 - -1.2
1,008,353 + +0.1
1,008,500 + +1.4
1,008,507 + -0.7
1,008,525 + +0.3

Or see this region's nucleotide sequence