Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7229

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15596 and 15597 are separated by 434 nucleotides15597 and 15598 are separated by 240 nucleotides mRNA_7228: 15596 - KOG1674 Cyclin, at 1,179,153 to 1,180,280 15596 mRNA_7229: 15597 - Hypothetical Protein, at 1,180,715 to 1,181,387 15597 mRNA_7230: 15598 - K07019 K07019 uncharacterized protein, at 1,181,628 to 1,183,243 15598

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,179,899 - 15596 mRNA_7228 0.66 -0.6
1,180,028 - 15596 mRNA_7228 0.78 -0.0
1,180,187 - +1.2
1,180,217 - -1.4
1,180,222 + +0.0
1,180,290 - -0.6
1,180,447 - -0.1
1,180,462 - -0.7
1,180,481 + -0.2
1,180,581 - -0.4
1,180,742 + -0.7
1,180,925 + 15597 mRNA_7229 0.31 +0.8
1,181,640 - +2.1
1,181,827 + 15598 mRNA_7230 0.12 +0.3

Or see this region's nucleotide sequence