Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7335

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15702 and 15703 are separated by 221 nucleotides15703 and 15704 are separated by 4 nucleotides mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29,500 to 31,086 15702 mRNA_7335: 15703 - Hypothetical Protein, at 31,308 to 31,781 15703 mRNA_7336: 15704 - Hypothetical Protein, at 31,786 to 32,791 15704

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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30,341 - 15702 mRNA_7334 0.53 +0.8
30,512 - 15702 mRNA_7334 0.64 -1.1
30,819 + 15702 mRNA_7334 0.83 -0.4
30,820 - 15702 mRNA_7334 0.83 -0.8
30,846 + 15702 mRNA_7334 0.85 -0.7
30,902 - 15702 mRNA_7334 0.88 -1.2
30,920 - 15702 mRNA_7334 0.89 +0.3
30,947 - -0.9
31,065 - +0.8
31,237 + -0.2
31,239 + -0.9
31,259 + +1.0
31,263 + -0.5
31,271 + +0.1
31,285 - -0.3
31,291 - -1.0
31,293 - -0.5
31,299 - +2.1
31,301 - +0.4
31,303 - -0.8
31,315 - -1.0
31,326 - -0.6
31,330 - -1.7
31,340 + -1.6
31,341 - +0.4
31,342 - -2.7
31,372 - 15703 mRNA_7335 0.14 +1.8
31,383 + 15703 mRNA_7335 0.16 +0.5
31,385 - 15703 mRNA_7335 0.16 -2.0
31,389 - 15703 mRNA_7335 0.17 +0.2
31,397 + 15703 mRNA_7335 0.19 -0.1
31,410 + 15703 mRNA_7335 0.22 -0.3
31,434 + 15703 mRNA_7335 0.27 -0.1
31,458 + 15703 mRNA_7335 0.32 -0.2
31,532 - 15703 mRNA_7335 0.47 +0.1
32,270 - 15704 mRNA_7336 0.48 -0.4
32,426 - 15704 mRNA_7336 0.64 -0.2
32,589 + 15704 mRNA_7336 0.80 +0.0
32,700 + +1.0
32,708 - -0.0
32,748 - +0.0

Or see this region's nucleotide sequence