Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7344

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15711 and 15712 are separated by 227 nucleotides15712 and 15713 are separated by 516 nucleotides mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45,735 to 46,573 15711 mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46,801 to 48,602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49,119 to 56,418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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46,292 - 15711 mRNA_7343 0.66 -0.4
46,598 - -1.8
46,749 - +0.7
46,854 + -1.6
46,870 - -2.4
47,603 - 15712 mRNA_7344 0.45 -0.8
47,890 - 15712 mRNA_7344 0.60 +0.4
47,897 + 15712 mRNA_7344 0.61 -1.6
47,924 + 15712 mRNA_7344 0.62 -0.7
48,306 + 15712 mRNA_7344 0.84 +0.5
48,340 - 15712 mRNA_7344 0.85 +1.2
48,514 - +0.5
48,656 - +0.1
48,657 - -0.2
48,658 - -0.4
48,659 + +0.6
48,665 - -0.6
48,670 + +0.4
48,673 + -0.1
48,682 + -2.2
48,686 - -0.8
48,691 + +0.2
48,695 + +0.4
48,785 - -0.6
48,809 - +0.4
48,810 - -2.3
48,812 - -0.2
48,834 - -0.8
48,857 - -0.7
48,869 - -0.0
48,871 - +0.4
48,877 - -0.1
48,891 + +1.2
48,892 - +0.2
48,948 - +0.8
49,009 - +0.5
49,086 + +1.5
49,113 - -0.0
49,193 + +0.1
49,449 - -1.1

Or see this region's nucleotide sequence