Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7368

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15735 and 15736 are separated by 339 nucleotides15736 and 15737 are separated by 538 nucleotides mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106,324 to 107,108 15735 mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107,448 to 110,616 15736 mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111,155 to 112,314 15737

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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106,578 + 15735 mRNA_7367 0.32 -0.2
106,644 - 15735 mRNA_7367 0.41 +0.5
106,692 - 15735 mRNA_7367 0.47 -0.8
106,724 + 15735 mRNA_7367 0.51 -0.1
106,855 - 15735 mRNA_7367 0.68 +0.9
106,887 - 15735 mRNA_7367 0.72 +0.0
106,892 + 15735 mRNA_7367 0.72 -0.2
107,196 + -0.8
107,432 - -1.0
107,440 - -1.1
107,445 - +0.4
107,599 - -1.1
107,759 + +0.3
107,777 - 15736 mRNA_7368 0.10 +0.5
108,049 + 15736 mRNA_7368 0.19 +0.4
108,310 - 15736 mRNA_7368 0.27 -2.5
108,379 + 15736 mRNA_7368 0.29 +1.0
108,517 - 15736 mRNA_7368 0.34 +0.8
109,180 - 15736 mRNA_7368 0.55 +0.3
109,474 - 15736 mRNA_7368 0.64 +1.4
109,518 - 15736 mRNA_7368 0.65 +0.3
109,942 + 15736 mRNA_7368 0.79 -2.9
109,993 + 15736 mRNA_7368 0.80 +0.5
110,134 - 15736 mRNA_7368 0.85 +1.4
110,272 + 15736 mRNA_7368 0.89 +0.1
110,411 - +1.7
110,411 - +0.0
110,573 + +0.3
110,688 + -1.2
110,708 + +0.2
110,727 + +1.0
110,728 - -1.8
110,731 + -3.0
110,743 + -2.9
110,745 - +0.3
110,747 - +0.2
110,750 + +0.2
110,750 - -0.0
110,755 + -1.9
110,757 + -0.3
110,763 + -2.0
110,764 + -1.1
110,851 - +0.1
110,878 - +1.0
110,886 - +0.4
110,892 - +0.2
110,904 + -0.2
110,904 + +0.4
110,905 - -1.2
110,929 - +0.3
110,945 - +0.1
110,949 - -0.4
110,950 + -0.0
110,958 + +0.3
110,979 - +0.6
111,011 - -0.2
111,022 + -0.3
111,023 - +0.3
111,034 + -0.5
111,040 - -0.2
111,178 - -0.8
111,225 + +0.5

Or see this region's nucleotide sequence