Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7474

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15841 and 15842 are separated by 276 nucleotides mRNA_7473: 15841 - Hypothetical Protein, at 367,495 to 368,778 15841 mRNA_7474: 15842 - HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756, at 369,055 to 372,143 15842

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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368,180 + 15841 mRNA_7473 0.53 +0.9
368,360 + 15841 mRNA_7473 0.67 +0.5
368,481 + 15841 mRNA_7473 0.77 +0.6
368,497 + 15841 mRNA_7473 0.78 -0.2
368,498 + 15841 mRNA_7473 0.78 -0.8
368,513 - 15841 mRNA_7473 0.79 -0.3
368,626 + 15841 mRNA_7473 0.88 -1.0
368,626 + 15841 mRNA_7473 0.88 +0.2
368,644 + 15841 mRNA_7473 0.89 +0.0
368,749 - +0.2
368,758 + +1.4
368,765 + +0.1
368,769 - +0.1
368,774 + -0.6
368,776 + -0.3
368,778 - -0.7
368,780 - -0.2
368,786 - -0.1
368,800 - +0.4
368,801 + -0.3
368,805 + +0.5
368,806 + -0.5
368,825 + -1.2
368,912 - -0.2
368,938 + -0.5
368,942 - +0.0
368,944 - -0.7
368,944 - +0.5
368,947 + -2.8
368,947 - -1.0
368,947 + -2.2
368,953 + +0.1
368,956 - +0.6
368,956 - +0.4
368,958 - +1.0
368,963 + -1.6
368,965 - +0.0
368,965 - -0.2
368,967 - -0.0
368,971 - -0.2
368,975 - -0.3
368,977 + -0.7
368,980 - +0.2
368,981 - -0.4
368,982 - -0.2
368,983 + +1.8
368,985 - +0.6
368,986 - -0.7
368,986 - +0.3
368,997 + -0.5
369,002 - +0.1
369,006 - +2.9
369,011 - -2.1
369,035 + -1.4
369,068 - -0.5
369,071 - +0.5
369,074 + -0.6
369,077 - -0.3
369,078 - -0.7
369,079 - -0.1
369,081 - -2.6
369,085 + +0.5
369,094 + +0.2
369,100 + -0.5
369,102 - -0.1
369,102 - -0.5
369,104 + +1.3
369,107 + -0.2
369,108 - -0.7
369,111 + -1.0
369,111 + -2.1
369,111 + -0.7
369,116 - +0.2
369,117 - +0.1
369,127 - -0.3
369,129 - +1.1
369,132 - +0.5
369,139 + -0.3
369,139 + +0.3
369,152 - -0.8
369,217 + -1.7
369,237 + -2.1
369,241 - -2.4
369,262 - +0.5
369,263 + -1.6
369,263 + -2.0
369,269 + +0.1
369,344 + -1.1
369,402 + 15842 mRNA_7474 0.11 -0.4
369,412 + 15842 mRNA_7474 0.12 -1.4
369,433 - 15842 mRNA_7474 0.12 -1.6
369,448 - 15842 mRNA_7474 0.13 +0.6
369,472 - 15842 mRNA_7474 0.13 +1.5
369,507 + 15842 mRNA_7474 0.15 -1.3
369,564 - 15842 mRNA_7474 0.16 +0.6
369,577 + 15842 mRNA_7474 0.17 +0.5
369,586 + 15842 mRNA_7474 0.17 +0.2
369,601 - 15842 mRNA_7474 0.18 -0.0
369,728 + 15842 mRNA_7474 0.22 -0.1
369,731 + 15842 mRNA_7474 0.22 +1.4
369,853 + 15842 mRNA_7474 0.26 +0.5
369,853 - 15842 mRNA_7474 0.26 -0.8
370,557 - 15842 mRNA_7474 0.49 +0.7
371,020 - 15842 mRNA_7474 0.64 +0.2
371,027 + 15842 mRNA_7474 0.64 +0.7
371,186 - 15842 mRNA_7474 0.69 +0.4
371,320 + 15842 mRNA_7474 0.73 +0.3
371,333 + 15842 mRNA_7474 0.74 +0.3
371,339 + 15842 mRNA_7474 0.74 -1.3
371,473 + 15842 mRNA_7474 0.78 +0.5
371,480 + 15842 mRNA_7474 0.79 +0.5
371,613 - 15842 mRNA_7474 0.83 +0.4
371,633 + 15842 mRNA_7474 0.83 -0.3
371,639 + 15842 mRNA_7474 0.84 +0.2
371,760 + 15842 mRNA_7474 0.88 -1.5
372,089 + +0.4
372,210 - -0.8
372,218 + +1.9
372,227 + -0.6
372,240 + +1.5
372,246 + -0.0
372,250 + -0.1
372,256 + -1.1
372,262 - -0.8
372,266 + +0.8
372,276 + +2.3
372,397 + +0.8
372,409 + -0.3
372,415 + -0.1
372,550 - -2.1
372,586 + -0.9
372,701 - +0.2
372,702 + -0.9
372,705 - -2.8
372,708 + -0.7
372,842 - +1.0
372,849 + -1.5
373,005 - +0.3
373,110 - -0.0
373,112 - +0.8

Or see this region's nucleotide sequence