Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7482

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15849 and 15850 are separated by 461 nucleotides15850 and 15851 are separated by 328 nucleotides mRNA_7481: 15849 - HMMPfam-Mitochondrial domain of unknown function (DUF1713)-PF08213, at 387,744 to 389,157 15849 mRNA_7482: 15850 - Hypothetical Protein, at 389,619 to 390,464 15850 mRNA_7483: 15851 - HMMPfam-Stress-induced bacterial acidophilic repeat motif-PF10685, at 390,793 to 391,582 15851

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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389,232 - +0.2
389,246 - +0.6
389,254 - -0.2
389,429 + -0.0
389,993 + 15850 mRNA_7482 0.44 +0.9
390,137 + 15850 mRNA_7482 0.61 +1.5
390,289 + 15850 mRNA_7482 0.79 +0.9
390,290 - 15850 mRNA_7482 0.79 -2.6
390,407 + -2.1
390,438 - +0.9
390,575 - -1.2
390,586 + -0.9
390,588 + +0.5
391,027 - 15851 mRNA_7483 0.30 -0.5

Or see this region's nucleotide sequence