Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7539

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15907 and 15908 are separated by 212 nucleotides mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519,946 to 522,544 15907 mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526 15908

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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518,947 + -0.1
518,959 - -0.9
518,977 + -1.6
519,067 + -1.7
519,115 + -0.9
519,121 - -0.3
519,125 + +0.3
519,142 + +0.5
519,146 - +0.0
519,157 + -4.6
519,162 + -0.9
519,189 - -2.6
519,199 - +0.3
519,226 - -0.3
519,244 - -0.3
519,265 + -0.2
519,373 - -0.9
519,386 - -0.9
519,515 - -1.0
519,530 - +0.2
519,542 + -0.0
519,550 - -2.3
519,552 - -0.1
519,554 + +0.2
519,692 - -1.3
520,117 - -0.5
520,573 + 15907 mRNA_7539 0.24 -0.6
521,159 - 15907 mRNA_7539 0.47 +0.7
521,404 - 15907 mRNA_7539 0.56 -1.1
521,446 + 15907 mRNA_7539 0.58 +0.1
521,453 + 15907 mRNA_7539 0.58 -1.3
521,827 - 15907 mRNA_7539 0.72 -0.3
522,156 + 15907 mRNA_7539 0.85 -0.6
522,287 + +1.2
522,303 - -1.3
522,387 - -2.1
522,402 - +0.3
522,451 - -0.1
522,484 + +0.3
522,623 - +0.3
522,625 + -0.7
522,627 + +0.6
522,628 + -0.0
522,630 - -3.8
522,633 + +1.0
522,646 + +2.4
522,653 - -0.1
522,659 + -0.5
522,671 + +0.1
522,682 - +2.0
522,786 - +0.3
522,811 - -1.1

Or see this region's nucleotide sequence