Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7551

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15918 and 15919 are separated by 529 nucleotides15919 and 15920 are separated by 299 nucleotides mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541,914 to 542,318 15918 mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542,848 to 546,528 15919 mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546,828 to 547,296 15920

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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542,784 - +0.2
542,795 - +0.7
542,799 + +0.0
542,930 - +0.5
542,947 + +0.3
542,950 + +0.3
542,958 - +0.3
543,214 + +0.4
543,217 - 15919 mRNA_7551 0.10 +1.0
543,248 - 15919 mRNA_7551 0.11 +1.2
543,392 - 15919 mRNA_7551 0.15 -1.1
543,409 - 15919 mRNA_7551 0.15 +1.9
543,688 + 15919 mRNA_7551 0.23 -1.0
543,959 + 15919 mRNA_7551 0.30 -1.4
543,960 - 15919 mRNA_7551 0.30 -0.6
543,981 - 15919 mRNA_7551 0.31 -0.4
543,997 + 15919 mRNA_7551 0.31 +0.5
544,132 - 15919 mRNA_7551 0.35 +0.1
544,133 + 15919 mRNA_7551 0.35 -1.0
544,145 + 15919 mRNA_7551 0.35 -0.9
544,259 - 15919 mRNA_7551 0.38 -0.7
545,303 + 15919 mRNA_7551 0.67 -2.7
546,002 - 15919 mRNA_7551 0.86 -3.5
546,120 - 15919 mRNA_7551 0.89 -0.1
546,135 - 15919 mRNA_7551 0.89 -1.7
546,148 + 15919 mRNA_7551 0.90 -1.0
546,238 + +0.1
546,282 + -0.1
546,741 + +0.7
546,868 - -0.6
546,877 - 15920 mRNA_7552 0.10 +0.0
547,464 - -0.6

Or see this region's nucleotide sequence