Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7554

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15921 and 15922 are separated by 126 nucleotides15922 and 15923 are separated by 338 nucleotides mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547,720 to 548,858 15921 mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548,985 to 552,468 15922 mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552,807 to 554,579 15923

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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548,002 - 15921 mRNA_7553 0.25 -1.1
548,005 - 15921 mRNA_7553 0.25 -0.8
548,006 + 15921 mRNA_7553 0.25 -1.7
548,022 + 15921 mRNA_7553 0.27 -0.6
548,472 + 15921 mRNA_7553 0.66 +1.2
548,509 - 15921 mRNA_7553 0.69 -0.2
548,888 - +0.5
549,301 + -0.5
549,941 - 15922 mRNA_7554 0.27 -2.3
552,162 + +1.5
552,288 + -2.0
552,296 - -2.4
552,437 - +0.3
552,495 + -1.8
552,515 + -1.7
552,879 - -0.8
552,914 + -0.3
552,914 - -0.0
553,148 + 15923 mRNA_7555 0.19 +0.2
553,193 + 15923 mRNA_7555 0.22 +0.6
553,207 + 15923 mRNA_7555 0.23 -0.3
553,432 - 15923 mRNA_7555 0.35 -0.3

Or see this region's nucleotide sequence