Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7573

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15940 and 15941 are separated by 566 nucleotides15941 and 15942 are separated by 246 nucleotides mRNA_7572: 15940 - Hypothetical Protein, at 595,983 to 596,534 15940 mRNA_7573: 15941 - KOG0331 ATP-dependent RNA helicase, at 597,101 to 600,100 15941 mRNA_7574: 15942 - K15275 SLC35B1 solute carrier family 35 (UDP-galactose transporter), member B1, at 600,347 to 601,742 15942

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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596,365 + 15940 mRNA_7572 0.69 -0.6
596,647 + -1.4
596,819 + +1.1
596,990 + +0.5
597,217 - -0.4
597,241 + +0.0
597,650 + 15941 mRNA_7573 0.18 +0.0
597,803 - 15941 mRNA_7573 0.23 -1.8
597,807 + 15941 mRNA_7573 0.24 -1.2
597,990 - 15941 mRNA_7573 0.30 -0.7
597,997 + 15941 mRNA_7573 0.30 +0.1
598,289 + 15941 mRNA_7573 0.40 +0.1
598,379 - 15941 mRNA_7573 0.43 -3.1
598,422 - 15941 mRNA_7573 0.44 +1.6
598,833 - 15941 mRNA_7573 0.58 -1.4
598,835 - 15941 mRNA_7573 0.58 -0.3
598,835 - 15941 mRNA_7573 0.58 -1.8
598,864 + 15941 mRNA_7573 0.59 -1.9
598,896 + 15941 mRNA_7573 0.60 +0.1
599,026 - 15941 mRNA_7573 0.64 -0.7
599,121 + 15941 mRNA_7573 0.67 -0.8
599,168 + 15941 mRNA_7573 0.69 -0.6
599,325 + 15941 mRNA_7573 0.74 +0.5
599,341 - 15941 mRNA_7573 0.75 +0.2
599,543 + 15941 mRNA_7573 0.81 -2.0
599,616 + 15941 mRNA_7573 0.84 -1.4
600,095 + -2.8
600,252 - -0.6

Or see this region's nucleotide sequence