Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7653

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16020 and 16021 are separated by 276 nucleotides16021 and 16022 are separated by 566 nucleotides mRNA_7652: 16020 - HMMPfam-XPG I-region-PF00867,PRINTS-Xeroderma pigmentosum group G/yeast RAD superfamily signature-PR00853,SMART-Xeroderma pigmentosum G I-region-SM00484,SUPERFAMILY--SSF47807,SUPERFAMILY--SSF88723, at 770,131 to 772,818 16020 mRNA_7653: 16021 - K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3, at 773,095 to 776,030 16021 mRNA_7654: 16022 - K06911 K06911 uncharacterized protein, at 776,597 to 777,755 16022

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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772,098 - 16020 mRNA_7652 0.73 +0.7
772,100 + 16020 mRNA_7652 0.73 -0.4
772,288 + 16020 mRNA_7652 0.80 -0.0
772,762 + -0.2
772,763 - -1.2
772,870 - -2.1
772,873 + -1.3
772,881 - -0.7
772,889 + -0.9
772,892 + -0.6
772,894 + +1.8
772,903 + -1.7
772,904 - -0.2
772,904 - +0.2
772,912 + +1.4
772,925 + -0.0
773,052 - -0.2
773,066 - +0.1
773,204 - -0.6
775,832 + +1.1
775,898 - -2.7
776,142 - -0.4
776,257 - -0.3
776,276 - -0.5
776,289 + -0.3
776,429 - -0.1
776,432 - -0.5
776,445 + +0.1
776,452 - -2.7
776,452 - -1.4
776,462 - +0.3
776,494 + -1.0
776,602 - +0.2
776,748 + 16022 mRNA_7654 0.13 -1.6
776,770 + 16022 mRNA_7654 0.15 -1.8
777,005 + 16022 mRNA_7654 0.35 +0.5

Or see this region's nucleotide sequence