Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7672

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16039 and 16040 are separated by 127 nucleotides16040 and 16041 are separated by 317 nucleotides mRNA_7671: 16039 - SUPERFAMILY--SSF56112, at 807,629 to 808,363 16039 mRNA_7672: 16040 - Hypothetical Protein, at 808,491 to 811,190 16040 mRNA_7673: 16041 - K14778 DDX49, DBP8 ATP-dependent RNA helicase DDX49/DBP8, at 811,508 to 813,410 16041

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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807,643 - -0.5
807,645 + -0.9
808,142 - 16039 mRNA_7671 0.70 +0.3
808,511 - -0.0
808,586 - -1.1
808,646 + +0.4
808,774 - 16040 mRNA_7672 0.10 -0.8
809,241 + 16040 mRNA_7672 0.28 -1.2
809,609 + 16040 mRNA_7672 0.41 -0.6
809,632 + 16040 mRNA_7672 0.42 +0.4
809,701 + 16040 mRNA_7672 0.45 -0.7
809,708 - 16040 mRNA_7672 0.45 +1.8
809,823 - 16040 mRNA_7672 0.49 +0.0
809,913 - 16040 mRNA_7672 0.53 +1.7
809,926 + 16040 mRNA_7672 0.53 +2.3
809,946 - 16040 mRNA_7672 0.54 +0.2
810,384 + 16040 mRNA_7672 0.70 -0.7
810,687 + 16040 mRNA_7672 0.81 -0.2
810,690 - 16040 mRNA_7672 0.81 -0.8
810,696 - 16040 mRNA_7672 0.82 -0.4
810,832 - 16040 mRNA_7672 0.87 -0.0
811,025 + +0.5
811,076 + -0.4
811,085 - +2.2
811,138 + +0.8
811,272 - -1.1
811,272 - -1.0
811,458 - +0.3

Or see this region's nucleotide sequence