Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7680

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16048 and 16049 are separated by 217 nucleotides mRNA_7680: 16048 - K11992 ACOT8, PTE acyl-CoA thioesterase 8, at 824,116 to 826,082 16048 mRNA_7681: 16049 - Hypothetical Protein, at 826,300 to 827,705 16049

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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823,118 - +1.0
823,120 + -1.3
823,130 - -0.2
823,132 - +0.8
823,144 + -2.1
823,150 + +0.6
823,157 + -1.3
823,329 + +0.7
823,476 - -0.2
823,555 - +0.2
823,575 + -0.0
823,712 + -1.1
823,831 - -0.9
823,871 + +0.1
823,957 - -1.1
823,974 - -0.4
823,995 - -0.9
823,996 - -0.9
823,999 - +1.2
824,000 - -0.5
824,004 + +0.2
824,032 + -0.4
824,034 + +0.7
824,034 - -0.8
824,035 + +0.2
824,046 + -0.2
824,050 + -0.1
824,055 + +0.7
824,148 + +0.7
824,156 + -0.7
824,157 - +0.1
824,171 - -0.1
824,178 - -1.1
824,184 + +0.5
824,184 - +1.3
824,196 + -0.8
824,321 - 16048 mRNA_7680 0.10 -1.7
824,341 + 16048 mRNA_7680 0.11 -0.1
824,346 - 16048 mRNA_7680 0.12 -0.6
824,486 + 16048 mRNA_7680 0.19 +0.1
824,493 + 16048 mRNA_7680 0.19 +2.0
824,867 + 16048 mRNA_7680 0.38 +0.8
824,996 + 16048 mRNA_7680 0.45 -2.9
825,203 + 16048 mRNA_7680 0.55 -0.6
825,287 - 16048 mRNA_7680 0.60 -0.3
825,331 + 16048 mRNA_7680 0.62 -0.4
825,332 + 16048 mRNA_7680 0.62 +0.2
825,560 - 16048 mRNA_7680 0.73 -0.1
825,647 + 16048 mRNA_7680 0.78 -1.1
825,900 - -0.6
826,098 - +1.2
826,240 + +0.3
826,344 + -0.4
826,347 - -0.2
826,444 + 16049 mRNA_7681 0.10 -0.4
826,509 - 16049 mRNA_7681 0.15 -0.3
827,060 + 16049 mRNA_7681 0.54 -0.0

Or see this region's nucleotide sequence