Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7915

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16283 and 16284 are separated by 383 nucleotides mRNA_7915: 16283 - SUPERFAMILY--SSF51445, at 12,129 to 14,300 16283 mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14,684 to 15,975 16284

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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11,145 + -0.2
11,292 - -0.3
11,303 - +1.2
11,307 - +0.1
11,309 - -0.1
11,310 + +0.1
11,314 + +0.2
11,323 + -1.0
11,342 - -0.3
11,431 + -1.1
11,437 - -1.5
11,461 - +0.7
11,465 - -0.2
11,475 + -0.2
11,482 - +0.4
11,482 - -0.0
11,483 + +0.3
11,484 + +0.4
11,486 - -0.6
11,486 - -2.3
11,486 - +0.2
11,487 - +0.5
11,489 - -1.0
11,494 + -3.4
11,494 - -0.6
11,495 + +0.7
11,497 + -1.2
11,500 - -0.8
11,501 - +0.0
11,503 - -0.8
11,503 - +1.6
11,503 - -2.5
11,505 - -0.4
11,506 + -0.4
11,506 + -0.0
11,506 + -0.6
11,512 + -0.8
11,513 - -0.7
11,513 - +1.1
11,524 - +0.3
11,525 - +1.1
11,527 + +0.1
11,527 - -0.8
11,529 - +0.6
11,529 - -0.1
11,530 - -0.2
11,530 + -0.9
11,532 + +0.9
11,540 + -2.0
11,547 + -1.4
11,549 + +1.1
11,557 + -1.2
11,557 + +0.1
11,557 + -0.2
11,561 - +0.2
11,573 - +0.3
11,586 - -1.6
11,589 + -1.6
11,591 + -1.8
11,596 + -1.1
11,609 + -0.8
11,620 + +0.2
11,646 - +1.3
11,649 - +1.3
11,651 - +0.1
11,654 + -0.2
11,656 - -0.7
11,671 - -0.1
11,674 + -1.1
11,676 + -2.7
11,680 + -0.4
11,684 + -2.1
11,684 - -1.2
11,696 - +0.2
11,696 + +0.1
11,704 - +0.3
11,709 - +1.0
11,709 - +1.5
11,710 + +0.3
11,710 + -3.8
11,715 - -0.7
11,721 + -0.9
11,724 - -0.5
11,724 - -0.3
11,734 - -1.8
11,755 - +0.7
11,766 + -0.0
11,767 + +0.9
11,768 - -2.9
11,778 - +0.1
11,779 + +1.5
11,792 - -2.0
11,904 + +0.5
11,915 + +0.2
11,922 + +1.0
11,923 - +0.7
11,931 + -1.7
11,938 - -2.0
12,072 + -2.9
12,180 + +0.7
12,330 - -1.3
12,410 - 16283 mRNA_7915 0.13 -1.1
12,645 - 16283 mRNA_7915 0.24 +0.1
12,767 - 16283 mRNA_7915 0.29 +0.5
12,784 + 16283 mRNA_7915 0.30 +0.4
13,198 - 16283 mRNA_7915 0.49 +0.7
13,417 + 16283 mRNA_7915 0.59 -1.0
13,504 - 16283 mRNA_7915 0.63 +1.1
13,509 + 16283 mRNA_7915 0.64 -0.4
13,533 + 16283 mRNA_7915 0.65 -1.7
13,950 - 16283 mRNA_7915 0.84 -0.8
13,953 + 16283 mRNA_7915 0.84 +1.0
14,353 - -0.2
14,370 - -0.5
14,410 + -0.2
14,532 - +0.5
14,689 + +0.5
14,696 - -2.0
14,836 - 16284 mRNA_7916 0.12 -0.5
14,843 + 16284 mRNA_7916 0.12 -0.2

Or see this region's nucleotide sequence