Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7939

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16306 and 16307 are separated by 204 nucleotides16307 and 16308 are separated by 455 nucleotides mRNA_7938: 16306 - Hypothetical Protein, at 55,876 to 58,183 16306 mRNA_7939: 16307 - Hypothetical Protein, at 58,388 to 59,651 16307 mRNA_7940: 16308 - Hypothetical Protein, at 60,107 to 61,381 16308

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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57,544 + 16306 mRNA_7938 0.72 +0.4
57,555 + 16306 mRNA_7938 0.73 -0.8
57,579 - 16306 mRNA_7938 0.74 -1.7
57,638 + 16306 mRNA_7938 0.76 -2.0
57,641 - 16306 mRNA_7938 0.76 -1.0
57,944 + 16306 mRNA_7938 0.90 -0.1
58,102 - +0.5
58,157 - +2.0
58,288 - -1.8
58,302 + +0.1
58,321 - -0.1
58,341 + -0.0
58,503 + -0.5
58,576 + 16307 mRNA_7939 0.15 -1.3
59,191 + 16307 mRNA_7939 0.64 -0.6
59,406 + 16307 mRNA_7939 0.81 -0.5
59,460 - 16307 mRNA_7939 0.85 +0.1
59,467 + 16307 mRNA_7939 0.85 -0.1
59,929 + -1.6
59,960 + -0.5
60,005 - +1.1
60,028 - -1.2
60,241 - 16308 mRNA_7940 0.11 -0.5
60,586 - 16308 mRNA_7940 0.38 +0.8

Or see this region's nucleotide sequence