Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7948

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16315 and 16316 are separated by 329 nucleotides16316 and 16317 are separated by 413 nucleotides mRNA_7947: 16315 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 73,248 to 74,114 16315 mRNA_7948: 16316 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 74,444 to 75,195 16316 mRNA_7949: 16317 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 75,609 to 76,482 16317

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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73,529 - 16315 mRNA_7947 0.32 -1.3
73,530 + 16315 mRNA_7947 0.33 -0.4
73,537 + 16315 mRNA_7947 0.33 +1.0
73,779 - 16315 mRNA_7947 0.61 +1.1
73,805 + 16315 mRNA_7947 0.64 +0.6
74,097 - -1.8
74,108 + +1.9
74,119 + -0.2
74,345 - -0.9
74,350 + -1.0
74,359 - +0.1
74,363 - -0.5
74,366 + -0.2
74,380 + -0.3
74,500 - -1.2
74,504 + +0.3
74,570 - 16316 mRNA_7948 0.17 +1.1
74,594 - 16316 mRNA_7948 0.20 -1.0
74,934 + 16316 mRNA_7948 0.65 +0.4
75,131 - -1.3
75,532 + +0.7
75,573 - -0.2
75,573 - +1.0
75,581 - -0.8
75,591 + -0.6
75,595 + -0.4
75,601 - +1.3
75,601 - -0.2
75,836 + 16317 mRNA_7949 0.26 -0.0
75,850 - 16317 mRNA_7949 0.28 +0.2
75,866 + 16317 mRNA_7949 0.29 -0.3
75,959 - 16317 mRNA_7949 0.40 -1.4
76,096 - 16317 mRNA_7949 0.56 -0.4
76,104 + 16317 mRNA_7949 0.57 -0.6
76,182 + 16317 mRNA_7949 0.66 -1.5

Or see this region's nucleotide sequence