Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7956

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16323 and 16324 are separated by 833 nucleotides16324 and 16325 are separated by 267 nucleotides mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93,400 to 95,869 16323 mRNA_7956: 16324 - K03146 THI4, THI1 thiamine thiazole synthase, at 96,703 to 99,029 16324 mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99,297 to 100,218 16325

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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95,841 - +0.0
95,858 - -1.8
96,009 - -0.1
96,072 - -2.7
96,083 + -0.5
96,179 + +2.3
96,285 - -0.4
96,298 + -0.5
96,473 + -3.1
96,497 + +1.8
96,513 + -2.2
96,533 - -1.3
96,538 + +0.1
96,554 - -2.2
96,567 - +0.1
96,574 + -3.2
96,580 - -1.8
96,590 - -0.8
96,605 + +0.3
96,616 + -0.4
96,631 + -1.1
96,633 - -2.0
96,641 - -0.6
96,943 - 16324 mRNA_7956 0.10 +0.1
96,963 + 16324 mRNA_7956 0.11 +0.0
97,088 + 16324 mRNA_7956 0.17 +0.1
97,234 + 16324 mRNA_7956 0.23 +0.4
97,238 + 16324 mRNA_7956 0.23 -1.4
97,282 + 16324 mRNA_7956 0.25 -0.2
97,877 + 16324 mRNA_7956 0.50 +0.1
98,340 + 16324 mRNA_7956 0.70 -0.3
98,343 - 16324 mRNA_7956 0.70 -0.3
98,797 + -0.8
98,905 + -0.4
98,941 - +0.0
98,943 - -0.6
98,982 + -1.4
99,218 + -1.4
99,418 - 16325 mRNA_7957 0.13 -0.1
99,423 + 16325 mRNA_7957 0.14 +0.1
99,500 + 16325 mRNA_7957 0.22 +0.3
99,652 - 16325 mRNA_7957 0.39 -0.9
99,858 + 16325 mRNA_7957 0.61 +0.3
99,861 - 16325 mRNA_7957 0.61 +1.5
99,873 + 16325 mRNA_7957 0.62 -1.1

Or see this region's nucleotide sequence