Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7970

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16337 and 16338 are separated by 269 nucleotides16338 and 16339 are separated by 292 nucleotides mRNA_7969: 16337 - Hypothetical Protein, at 114,657 to 115,244 16337 mRNA_7970: 16338 - SUPERFAMILY--SSF144232, at 115,514 to 116,661 16338 mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116,954 to 120,210 16339

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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114,530 + -0.2
114,531 + +1.7
114,647 + -2.1
114,651 - -0.4
114,724 - 16337 mRNA_7969 0.11 -0.5
114,731 + 16337 mRNA_7969 0.13 +0.1
114,760 - 16337 mRNA_7969 0.18 -0.7
114,840 - 16337 mRNA_7969 0.31 -0.6
114,980 - 16337 mRNA_7969 0.55 -0.2
114,998 - 16337 mRNA_7969 0.58 -0.6
115,000 - 16337 mRNA_7969 0.58 -1.0
115,078 - 16337 mRNA_7969 0.72 +0.3
115,087 - 16337 mRNA_7969 0.73 -0.5
115,087 + 16337 mRNA_7969 0.73 +1.1
115,090 - 16337 mRNA_7969 0.74 +0.5
115,093 - 16337 mRNA_7969 0.74 -1.3
115,182 + 16337 mRNA_7969 0.89 +0.9
115,234 + +0.3
115,284 - -0.4
115,306 + -1.2
115,309 - -1.6
115,534 + -2.0
115,698 + 16338 mRNA_7970 0.16 -1.7
115,717 - 16338 mRNA_7970 0.18 -0.3
115,819 - 16338 mRNA_7970 0.27 -0.8
115,839 + 16338 mRNA_7970 0.28 +0.2
115,966 - 16338 mRNA_7970 0.39 -2.5
116,048 + 16338 mRNA_7970 0.47 -1.2
116,051 - 16338 mRNA_7970 0.47 +0.4
116,114 + 16338 mRNA_7970 0.52 +0.5
116,117 + 16338 mRNA_7970 0.53 +0.4
116,135 - 16338 mRNA_7970 0.54 -2.3
116,170 + 16338 mRNA_7970 0.57 -0.6
116,185 - 16338 mRNA_7970 0.58 -0.3
116,267 + 16338 mRNA_7970 0.66 +1.0
116,290 - 16338 mRNA_7970 0.68 -0.0
116,404 + 16338 mRNA_7970 0.78 +0.1
116,430 - 16338 mRNA_7970 0.80 -0.6
116,431 + 16338 mRNA_7970 0.80 -1.0
116,437 - 16338 mRNA_7970 0.80 +1.1
116,440 - 16338 mRNA_7970 0.81 +0.3
116,488 + 16338 mRNA_7970 0.85 +0.1
116,586 - -2.8
116,594 - +0.9
116,736 + -0.1
116,793 + -0.4
116,797 - +1.3
117,105 + +0.1
117,159 + +1.0
117,226 - -2.6
117,229 - -1.3
117,247 - -1.6

Or see this region's nucleotide sequence