Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7983

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16350 and 16351 are separated by 421 nucleotides16351 and 16352 are separated by 269 nucleotides mRNA_7982: 16350 - KOG2504 Monocarboxylate transporter, at 144,302 to 146,236 16350 mRNA_7983: 16351 - K11495 CENPA histone H3-like centromeric protein A, at 146,658 to 147,555 16351 mRNA_7984: 16352 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 147,825 to 148,945 16352

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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145,685 - 16350 mRNA_7982 0.71 -1.4
145,710 - 16350 mRNA_7982 0.73 +0.5
145,867 + 16350 mRNA_7982 0.81 -1.9
145,979 - 16350 mRNA_7982 0.87 +1.3
145,981 - 16350 mRNA_7982 0.87 -0.6
145,986 + 16350 mRNA_7982 0.87 -1.4
146,000 + 16350 mRNA_7982 0.88 +0.1
146,164 + +1.0
146,290 + -0.0
146,306 - +0.6
146,307 + -0.6
146,327 + +0.7
146,366 + -0.8
146,446 + -0.5
146,448 - +0.3
146,449 + +0.2
146,465 + +0.0
146,465 + +0.3
146,472 + -0.0
147,774 + +0.9
147,849 + +1.4
148,161 - 16352 mRNA_7984 0.30 -0.3
148,166 + 16352 mRNA_7984 0.30 -1.6
148,446 - 16352 mRNA_7984 0.55 +0.1
148,454 + 16352 mRNA_7984 0.56 -0.1
148,459 + 16352 mRNA_7984 0.57 -1.5

Or see this region's nucleotide sequence