Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8086

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16453 and 16454 are separated by 840 nucleotides mRNA_8085: 16453 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 384,174 to 386,638 16453 mRNA_8086: 16454 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 387,479 to 389,690 16454

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
386,656 + -0.3
386,833 + -1.4
386,861 + -0.4
386,967 - -0.1
386,973 - -1.5
386,983 - +0.3
386,987 - -0.1
386,990 - -2.8
386,995 + -1.3
387,000 - +0.6
387,002 + +1.2
387,005 + -0.4
387,006 - +0.9
387,006 - -2.0
387,011 + -0.1
387,014 + -0.6
387,021 + -1.5
387,023 + +0.1
387,024 - +1.4
387,024 - -2.1
387,024 - -2.2
387,025 + -0.4
387,040 + -1.1
387,045 + -0.3
387,073 - -1.7
387,135 - -0.1
387,206 - +0.4
387,298 + -0.5
387,312 - -1.1
387,313 - -2.2
387,325 - -2.6
387,341 - -0.2
387,439 + -1.2
387,461 + -1.2
387,773 + 16454 mRNA_8086 0.13 +0.3
387,890 - 16454 mRNA_8086 0.19 -2.8
388,184 + 16454 mRNA_8086 0.32 -1.1
388,768 - 16454 mRNA_8086 0.58 -0.1
388,774 + 16454 mRNA_8086 0.59 -1.2
388,776 - 16454 mRNA_8086 0.59 +0.1
388,792 - 16454 mRNA_8086 0.59 -1.5
388,793 + 16454 mRNA_8086 0.59 -0.7
389,637 - +0.1
389,659 - -1.6
389,789 + +0.0
389,932 - -0.5
389,939 - +1.1
389,939 - +1.9
389,946 + -0.4
389,948 + +0.5
390,071 - +0.9
390,083 - -0.7
390,090 + -0.2
390,107 - -1.6
390,114 - +1.7
390,117 + -0.9
390,128 - -1.6
390,134 + +0.2
390,136 + +0.4
390,137 + -1.2
390,139 + -1.3
390,139 + -0.2
390,141 - -0.9
390,141 + -0.3
390,142 - -0.2
390,142 + -1.6
390,143 + -0.1
390,145 + -1.7
390,599 + -1.6

Or see this region's nucleotide sequence