Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8164

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16531 and 16532 are separated by 215 nucleotides mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563,626 to 564,400 16531 mRNA_8164: 16532 - Hypothetical Protein, at 564,616 to 567,626 16532

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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563,979 + 16531 mRNA_8163 0.46 +1.3
564,106 - 16531 mRNA_8163 0.62 -0.6
564,110 + 16531 mRNA_8163 0.62 +0.8
564,212 - 16531 mRNA_8163 0.76 +1.0
564,222 - 16531 mRNA_8163 0.77 -1.2
564,234 - 16531 mRNA_8163 0.78 +0.5
564,410 + +0.2
564,431 - -0.2
564,435 + +0.1
564,576 - +0.1
564,586 + -0.2
564,688 - -1.6
564,858 + -0.5
564,972 - 16532 mRNA_8164 0.12 -1.9
565,035 + 16532 mRNA_8164 0.14 -0.6
565,147 + 16532 mRNA_8164 0.18 +0.1
565,150 - 16532 mRNA_8164 0.18 +0.0
565,175 + 16532 mRNA_8164 0.19 -0.2
565,409 - 16532 mRNA_8164 0.26 +1.2
565,603 + 16532 mRNA_8164 0.33 -2.1
565,816 + 16532 mRNA_8164 0.40 +0.5
566,976 - 16532 mRNA_8164 0.78 -0.6
566,991 + 16532 mRNA_8164 0.79 -0.5
567,036 - 16532 mRNA_8164 0.80 -1.4
567,237 - 16532 mRNA_8164 0.87 -0.6
567,261 - 16532 mRNA_8164 0.88 +0.1
567,392 + -0.7
567,409 - +0.8
567,750 + +0.8
567,761 + -1.1
567,930 - +0.1
567,980 + +0.2
568,369 + +0.6
568,419 - +1.0
568,583 - -1.8

Or see this region's nucleotide sequence