Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8170

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16537 and 16538 are separated by 899 nucleotides16538 and 16539 are separated by 125 nucleotides mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866 16537 mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585,766 to 587,530 16538 mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587,656 to 589,364 16539

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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585,562 + -0.7
585,943 + 16538 mRNA_8170 0.10 -0.4
585,985 + 16538 mRNA_8170 0.12 +0.0
585,995 - 16538 mRNA_8170 0.13 -0.3
586,162 + 16538 mRNA_8170 0.22 -0.3
586,290 + 16538 mRNA_8170 0.30 +0.7
586,307 - 16538 mRNA_8170 0.31 -0.4
586,338 - 16538 mRNA_8170 0.32 +0.4
586,452 + 16538 mRNA_8170 0.39 +0.1
586,584 - 16538 mRNA_8170 0.46 -0.0
586,585 + 16538 mRNA_8170 0.46 -0.3
586,873 + 16538 mRNA_8170 0.63 -0.7
587,056 - 16538 mRNA_8170 0.73 -0.3
587,181 + 16538 mRNA_8170 0.80 -1.0
587,344 + 16538 mRNA_8170 0.89 +0.3
587,478 - -0.3
587,604 + -0.6
587,618 - -2.1
587,626 + +0.6
588,177 - 16539 mRNA_8171 0.30 -1.3
588,347 + 16539 mRNA_8171 0.40 +0.4

Or see this region's nucleotide sequence