Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8190

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16557 and 16558 are separated by 127 nucleotides16558 and 16559 are separated by 150 nucleotides mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629,881 to 631,255 16557 mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631,383 to 634,543 16558 mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634,694 to 637,536 16559

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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630,454 - 16557 mRNA_8189 0.42 +0.6
630,461 + 16557 mRNA_8189 0.42 +0.6
630,464 + 16557 mRNA_8189 0.42 -0.5
630,605 - 16557 mRNA_8189 0.53 +2.5
630,864 - 16557 mRNA_8189 0.71 -0.4
630,892 + 16557 mRNA_8189 0.74 +0.4
631,003 - 16557 mRNA_8189 0.82 -0.1
631,168 - +0.6
631,193 + -0.7
631,193 + +0.4
631,194 + -0.3
631,319 - +0.2
631,319 - +0.3
631,331 - -0.8
631,337 + +0.1
631,358 - -0.5
631,632 - -2.6
632,238 + 16558 mRNA_8190 0.27 +0.4
632,339 - 16558 mRNA_8190 0.30 -0.1
632,681 - 16558 mRNA_8190 0.41 -1.7
632,684 + 16558 mRNA_8190 0.41 +0.8
632,685 + 16558 mRNA_8190 0.41 -0.2
632,689 - 16558 mRNA_8190 0.41 +0.3
632,699 + 16558 mRNA_8190 0.42 -0.9
632,719 - 16558 mRNA_8190 0.42 +0.4
632,760 + 16558 mRNA_8190 0.44 +0.2
632,830 - 16558 mRNA_8190 0.46 +0.0
632,892 - 16558 mRNA_8190 0.48 +0.3
633,284 + 16558 mRNA_8190 0.60 -1.8
633,580 - 16558 mRNA_8190 0.70 -0.1
633,614 + 16558 mRNA_8190 0.71 -0.0
634,037 - 16558 mRNA_8190 0.84 -0.4
634,375 - -1.3
634,622 - -0.5
634,625 + -0.2
634,631 + -1.2
634,636 + -1.8
634,659 - -0.8
634,671 + -0.1
634,679 + -0.8
634,755 + +1.7
634,795 + +1.0
634,800 + +0.4
634,962 + -1.3
635,069 - 16559 mRNA_8191 0.13 -0.3
635,086 - 16559 mRNA_8191 0.14 -0.2
635,245 - 16559 mRNA_8191 0.19 -0.4
635,382 + 16559 mRNA_8191 0.24 -0.6

Or see this region's nucleotide sequence