Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8220

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16587 and 16588 are separated by 228 nucleotides16588 and 16589 are separated by 100 nucleotides mRNA_8219: 16587 - K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1), at 698,551 to 700,808 16587 mRNA_8220: 16588 - KOG3894 SNARE protein Syntaxin 18/UFE1, at 701,037 to 702,340 16588 mRNA_8221: 16589 - KOG3140 Predicted membrane protein, at 702,441 to 703,886 16589

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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702,357 + -1.2
702,453 + +0.4
702,481 - -1.5
702,640 - 16589 mRNA_8221 0.14 +0.0
702,642 + 16589 mRNA_8221 0.14 -0.4
703,227 + 16589 mRNA_8221 0.54 -0.3

Or see this region's nucleotide sequence