Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8281

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16648 and 16649 are separated by 567 nucleotides16649 and 16650 are separated by 126 nucleotides mRNA_8280: 16648 - KOG2157 Predicted tubulin-tyrosine ligase, at 830,220 to 831,668 16648 mRNA_8281: 16649 - Hypothetical Protein, at 832,236 to 832,909 16649 mRNA_8282: 16650 - K11359 SPT7 transcriptional activator SPT7, at 833,036 to 836,352 16650

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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832,019 + -1.4
832,745 - 16649 mRNA_8281 0.76 +0.5
832,956 - -0.8
833,203 - -1.7
833,328 + -1.1
833,738 + 16650 mRNA_8282 0.21 -1.7

Or see this region's nucleotide sequence