Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8423

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16790 and 16791 are separated by 391 nucleotides16791 and 16792 are separated by 77 nucleotides16792 and 16793 are separated by 567 nucleotides mRNA_8422: 16790 - K06675 SMC4 structural maintenance of chromosome 4, at 1,187,443 to 1,193,584 16790 mRNA_8423: 16791 - SUPERFAMILY--SSF52047, at 1,193,976 to 1,195,512 16791 mRNA_8424: 16792 - Hypothetical Protein, at 1,195,590 to 1,195,916 16792 mRNA_8425: 16793 - K06674 SMC2 structural maintenance of chromosome 2, at 1,196,484 to 1,200,962 16793

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,193,565 - -0.5
1,193,862 - +1.4
1,193,941 - -1.2
1,193,965 - +1.9
1,194,113 - -1.0
1,194,119 + -0.1
1,194,121 - +0.7
1,194,129 + -0.6
1,194,159 - 16791 mRNA_8423 0.12 -1.0
1,194,160 + 16791 mRNA_8423 0.12 -2.1
1,194,231 - 16791 mRNA_8423 0.17 -0.8
1,194,259 + 16791 mRNA_8423 0.18 -0.2
1,194,385 - 16791 mRNA_8423 0.27 +0.5
1,194,392 - 16791 mRNA_8423 0.27 -0.8
1,194,397 - 16791 mRNA_8423 0.27 +0.6
1,194,406 + 16791 mRNA_8423 0.28 -0.0
1,194,406 + 16791 mRNA_8423 0.28 -0.5
1,194,406 + 16791 mRNA_8423 0.28 +0.4
1,194,410 + 16791 mRNA_8423 0.28 -1.0
1,194,436 - 16791 mRNA_8423 0.30 -1.6
1,194,667 - 16791 mRNA_8423 0.45 -0.4
1,194,995 - 16791 mRNA_8423 0.66 +0.3
1,195,175 - 16791 mRNA_8423 0.78 -3.1
1,195,180 + 16791 mRNA_8423 0.78 +0.9
1,195,297 - 16791 mRNA_8423 0.86 -0.4
1,195,885 - +0.1
1,195,896 + -0.9
1,196,173 - -1.5
1,196,175 - -1.4
1,196,206 - -0.1
1,196,280 - +2.0
1,196,339 - -1.3
1,196,478 + +1.1
1,196,483 + -1.6

Or see this region's nucleotide sequence