Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8446

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16813 and 16814 are separated by 253 nucleotides16814 and 16815 are separated by 550 nucleotides mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1,247,628 to 1,249,851 16813 mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1,250,105 to 1,254,255 16814 mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1,254,806 to 1,256,692 16815

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,249,136 - 16813 mRNA_8445 0.68 -0.5
1,249,167 - 16813 mRNA_8445 0.69 -1.1
1,249,551 - 16813 mRNA_8445 0.86 -2.1
1,249,570 - 16813 mRNA_8445 0.87 +0.3
1,249,604 - 16813 mRNA_8445 0.89 +0.5
1,249,736 - -0.8
1,249,831 - +0.2
1,250,241 + +0.1
1,250,354 - +1.9
1,250,363 + +0.4
1,250,419 - -2.6
1,250,462 - +0.3
1,250,763 - 16814 mRNA_8446 0.16 +1.7
1,250,779 - 16814 mRNA_8446 0.16 +0.2
1,251,028 + 16814 mRNA_8446 0.22 -0.5
1,251,057 - 16814 mRNA_8446 0.23 -0.3
1,251,172 - 16814 mRNA_8446 0.26 -0.6
1,251,307 - 16814 mRNA_8446 0.29 +0.4
1,251,369 - 16814 mRNA_8446 0.30 +1.4
1,251,472 - 16814 mRNA_8446 0.33 -1.7
1,251,484 - 16814 mRNA_8446 0.33 -1.9
1,251,510 - 16814 mRNA_8446 0.34 -3.4
1,251,533 - 16814 mRNA_8446 0.34 -0.9
1,251,535 - 16814 mRNA_8446 0.34 -1.9
1,251,576 + 16814 mRNA_8446 0.35 +0.9
1,251,647 - 16814 mRNA_8446 0.37 -1.4
1,251,753 + 16814 mRNA_8446 0.40 -1.7
1,251,963 + 16814 mRNA_8446 0.45 +0.4
1,251,973 + 16814 mRNA_8446 0.45 -2.1
1,252,039 - 16814 mRNA_8446 0.47 -1.1
1,252,080 + 16814 mRNA_8446 0.48 -0.9
1,252,352 + 16814 mRNA_8446 0.54 +1.1
1,252,832 + 16814 mRNA_8446 0.66 -1.1
1,252,949 - 16814 mRNA_8446 0.69 -1.1
1,252,986 - 16814 mRNA_8446 0.69 -1.8
1,253,094 - 16814 mRNA_8446 0.72 -0.3
1,253,144 + 16814 mRNA_8446 0.73 +0.1
1,253,446 + 16814 mRNA_8446 0.80 +1.4
1,253,552 - 16814 mRNA_8446 0.83 +0.0
1,253,844 - -1.7
1,253,844 + -3.0
1,253,963 + -0.4
1,254,217 - +1.4
1,254,290 + -1.2
1,254,406 - +0.1
1,254,413 + +0.4
1,254,435 + -0.4
1,254,439 - -0.7
1,254,445 + +0.0
1,254,451 + +0.8
1,254,496 + -1.7
1,254,503 - +1.4
1,254,539 - -0.4
1,254,540 - +1.6
1,254,604 - +0.3
1,254,606 - -2.1
1,254,611 - +0.1
1,254,626 - -0.2
1,254,627 - -0.6
1,254,632 - +0.2
1,254,745 + +0.3
1,254,761 + -0.6
1,254,764 + -0.5
1,254,778 + -1.2

Or see this region's nucleotide sequence