Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8480

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16847 and 16848 are separated by 377 nucleotides16848 and 16849 are separated by 188 nucleotides mRNA_8479: 16847 - Hypothetical Protein, at 1,322,853 to 1,323,925 16847 mRNA_8480: 16848 - KOG2174 Leptin receptor gene-related protein, at 1,324,303 to 1,324,895 16848 mRNA_8481: 16849 - Hypothetical Protein, at 1,325,084 to 1,327,878 16849

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,323,379 - 16847 mRNA_8479 0.49 +0.6
1,323,379 - 16847 mRNA_8479 0.49 +0.2
1,323,541 + 16847 mRNA_8479 0.64 +2.0
1,323,712 + 16847 mRNA_8479 0.80 -2.3
1,323,731 - 16847 mRNA_8479 0.82 -1.7
1,323,989 + +1.9
1,324,037 - -1.4
1,324,115 - +0.4
1,324,254 - -0.1
1,324,264 - -0.1
1,324,281 - +0.8
1,324,304 + +0.5
1,324,316 + -1.0
1,324,599 - 16848 mRNA_8480 0.50 -1.4
1,324,718 - 16848 mRNA_8480 0.70 +1.1
1,324,733 - 16848 mRNA_8480 0.73 -0.3
1,324,863 + -1.2
1,325,010 + -0.0
1,325,023 + -0.7
1,325,048 + +0.0
1,325,052 - +1.2
1,325,142 + -0.3
1,325,168 - -1.1
1,325,624 - 16849 mRNA_8481 0.19 -0.2
1,325,633 - 16849 mRNA_8481 0.20 +0.9
1,325,756 - 16849 mRNA_8481 0.24 -0.9
1,325,759 + 16849 mRNA_8481 0.24 +0.2
1,325,841 - 16849 mRNA_8481 0.27 +1.2
1,325,842 - 16849 mRNA_8481 0.27 -1.4

Or see this region's nucleotide sequence