Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_32

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8399 and 8400 are separated by 294 nucleotides8400 and 8401 are separated by 355 nucleotides mRNA_31: 8399 - K01520 dut, DUT dUTP pyrophosphatase, at 76,865 to 77,832 8399 mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78,127 to 78,849 8400 mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79,205 to 81,384 8401

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
77,979 + -1.7
77,984 + +0.8
77,995 - -1.2
78,998 - +0.4
79,008 - +1.7
79,008 + +0.1
79,024 - -1.1
79,034 + +0.9
79,036 + -0.2
79,041 - -0.0
79,042 + +0.5
79,043 + -0.8
79,190 + +0.7
79,324 + -0.1
79,480 + 8401 mRNA_33 0.13 +1.4
79,728 - 8401 mRNA_33 0.24 -1.5

Or see this region's nucleotide sequence