Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_93

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8461 and 8462 are separated by 151 nucleotides mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219,909 to 221,427 8461 mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221,579 to 223,787 8462

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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219,036 + -0.3
219,050 - +0.6
219,077 + -1.2
219,109 + -1.1
219,176 + -1.1
219,207 + -0.1
219,221 - -3.1
219,225 + -2.7
219,234 + +1.1
219,236 + +0.4
219,244 + +1.3
219,245 - -0.4
219,250 + +0.1
219,252 + +0.4
219,255 - -0.9
219,263 - +0.3
219,275 + -1.3
219,278 - -0.5
219,287 - +0.5
219,294 - -0.4
219,393 + -1.2
219,399 - +0.2
219,406 - +2.0
219,408 - -0.9
219,508 - +0.5
219,529 + -1.5
219,532 + -0.2
219,542 - +0.2
219,546 - +0.0
219,547 + +1.4
219,668 - +0.1
219,669 - -2.6
219,672 + +2.6
219,999 + +0.7
220,132 - 8461 mRNA_93 0.15 -0.3
220,138 - 8461 mRNA_93 0.15 -1.9
220,415 - 8461 mRNA_93 0.33 -0.9
220,442 + 8461 mRNA_93 0.35 -0.1
221,592 - +0.9
221,611 + -1.3
221,664 + +0.6
221,749 + +1.3
222,058 + 8462 mRNA_94 0.22 -1.4
222,064 - 8462 mRNA_94 0.22 -1.8

Or see this region's nucleotide sequence