Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_122

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8489 and 8490 are separated by 316 nucleotides8490 and 8491 are separated by 54 nucleotides8491 and 8492 are separated by 128 nucleotides mRNA_121: 8489 - BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255], at 295,395 to 296,134 8489 mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296,451 to 297,684 8490 mRNA_123: 8491 - Hypothetical Protein, at 297,739 to 298,245 8491 mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298,374 to 299,465 8492

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
295,465 + +0.6
295,477 + 8489 mRNA_121 0.11 -3.5
295,626 + 8489 mRNA_121 0.31 +0.1
296,093 - -0.5
296,221 - +0.3
296,223 + +0.7
296,226 + -0.8
296,362 + +0.3
296,423 + +0.2
296,859 - 8490 mRNA_122 0.33 -0.1
297,757 - +1.1
297,769 + +0.6
297,812 - 8491 mRNA_123 0.14 +1.7
297,840 - 8491 mRNA_123 0.20 -0.3
297,841 + 8491 mRNA_123 0.20 -1.0
297,945 + 8491 mRNA_123 0.41 +0.1
297,960 + 8491 mRNA_123 0.44 -0.2
297,983 + 8491 mRNA_123 0.48 -2.5
297,983 + 8491 mRNA_123 0.48 +0.4
297,998 - 8491 mRNA_123 0.51 -0.8
298,005 - 8491 mRNA_123 0.52 -0.4
298,142 - 8491 mRNA_123 0.79 -0.4
298,194 + 8491 mRNA_123 0.90 -1.0
298,203 + -0.2
298,225 + +1.0
298,233 + -0.1
298,241 + -1.3
298,335 - -1.3
298,356 + -0.5

Or see this region's nucleotide sequence