Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_157

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8524 and 8525 are separated by 679 nucleotides8525 and 8526 are separated by 179 nucleotides mRNA_156: 8524 - Hypothetical Protein, at 390,124 to 390,698 8524 mRNA_157: 8525 - KOG3066 Translin-associated protein X, at 391,378 to 392,552 8525 mRNA_158: 8526 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 392,732 to 393,571 8526

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
390,482 - 8524 mRNA_156 0.62 -0.1
390,609 - 8524 mRNA_156 0.84 -0.1
390,880 - +0.7
390,882 + +0.2
390,886 - +1.4
390,898 - -0.1
391,195 + -1.5
391,614 - 8525 mRNA_157 0.20 +0.9
391,615 + 8525 mRNA_157 0.20 -1.2
391,654 + 8525 mRNA_157 0.23 -1.9
391,740 - 8525 mRNA_157 0.31 -3.4
391,776 - 8525 mRNA_157 0.34 +0.2
392,222 - 8525 mRNA_157 0.72 -0.5
392,255 - 8525 mRNA_157 0.75 +0.6
392,641 - -0.1
392,768 - +0.8
393,026 - 8526 mRNA_158 0.35 -0.1
393,249 + 8526 mRNA_158 0.62 +0.4
393,362 - 8526 mRNA_158 0.75 -0.8

Or see this region's nucleotide sequence