Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_161

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8528 and 8529 are separated by 889 nucleotides8529 and 8530 are separated by 512 nucleotides mRNA_160: 8528 - K05349 bglX beta-glucosidase, at 396,327 to 398,883 8528 mRNA_161: 8529 - KOG1727 Microtubule-binding protein (translationally controlled tumor protein), at 399,773 to 400,854 8529 mRNA_162: 8530 - BLAST NADH dehydrogenase [ubiquinone] 1 alpha subcomplex su..., at 401,367 to 403,016 8530

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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398,995 - -0.3
399,262 + -1.8
399,284 - -0.4
400,978 - -0.9
400,978 - +0.6
400,999 - +0.3
401,000 - +0.9
401,014 + +0.1
401,024 - +0.2
401,028 + +0.4
401,032 - -1.9
401,040 - -1.1
401,040 - -0.9
401,047 - -0.3
401,056 + +0.9
401,056 + +0.2
401,058 + -1.6
401,058 + -1.6
401,153 + +0.8
401,188 + -2.8
401,188 - -1.3
401,202 - -0.4
401,214 + -0.2
401,338 - -0.0
401,361 + -1.6
401,385 + -1.7
401,500 + +0.4
401,512 - -0.6
401,514 + -0.4
401,611 - 8530 mRNA_162 0.15 +0.6
401,635 + 8530 mRNA_162 0.16 -0.1

Or see this region's nucleotide sequence