Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_165

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8532 and 8533 are separated by 411 nucleotides8533 and 8534 are separated by 313 nucleotides mRNA_164: 8532 - Hypothetical Protein, at 404,595 to 407,143 8532 mRNA_165: 8533 - K12602 WDR61, REC14, SKI8 WD repeat-containing protein 61, at 407,555 to 409,013 8533 mRNA_166: 8534 - K07936 RAN GTP-binding nuclear protein Ran, at 409,327 to 410,564 8534

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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406,735 + 8532 mRNA_164 0.84 +0.2
406,737 + 8532 mRNA_164 0.84 +0.4
406,887 - 8532 mRNA_164 0.90 +0.1
407,039 - -2.3
407,178 + -0.8
407,180 + -0.1
407,188 - +0.0
407,490 - -3.1
407,505 - -0.7
407,516 + -0.3
407,652 + -1.2
407,800 + 8533 mRNA_165 0.17 -1.4
408,365 - 8533 mRNA_165 0.56 -1.5
408,655 + 8533 mRNA_165 0.75 -0.2
408,660 - 8533 mRNA_165 0.76 -0.2
408,703 + 8533 mRNA_165 0.79 -1.2
408,787 - 8533 mRNA_165 0.84 +0.1
409,102 + +0.9
409,105 + -1.1
409,147 + -1.6

Or see this region's nucleotide sequence