Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_189

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8556 and 8557 are separated by 644 nucleotides8557 and 8558 are separated by 125 nucleotides mRNA_188: 8556 - K14536 RIA1 ribosome assembly protein 1, at 455,692 to 459,820 8556 mRNA_189: 8557 - Hypothetical Protein, at 460,465 to 463,611 8557 mRNA_190: 8558 - K09526 DNAJC6 DnaJ homolog subfamily C member 6, at 463,737 to 466,686 8558

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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459,937 - +1.7
460,074 + -0.4
460,219 + -3.0
460,222 - +0.1
460,230 + -1.7
460,360 + +0.2
460,369 - -1.1
460,381 - -2.1
460,403 + +0.3
460,412 + +0.2
460,562 + +0.4
460,802 - 8557 mRNA_189 0.11 +0.8
460,821 - 8557 mRNA_189 0.11 +0.8
460,822 + 8557 mRNA_189 0.11 +0.0
460,993 + 8557 mRNA_189 0.17 +0.2
461,983 - 8557 mRNA_189 0.48 -0.5
462,132 + 8557 mRNA_189 0.53 -0.2
462,438 + 8557 mRNA_189 0.63 +0.4
462,839 - 8557 mRNA_189 0.75 -0.4
463,299 - -0.7
463,340 - -0.1
463,459 - -0.8
463,473 + +0.8

Or see this region's nucleotide sequence