Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_244

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8611 and 8612 are separated by 503 nucleotides8612 and 8613 are separated by 323 nucleotides mRNA_243: 8611 - HMMPfam-Replication factor A protein 3-PF08661,SUPERFAMILY--SSF50249, at 595,107 to 595,773 8611 mRNA_244: 8612 - K17778 TIM10 mitochondrial import inner membrane translocase subunit TIM10, at 596,277 to 596,788 8612 mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597,112 to 598,781 8613

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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595,775 - -1.9
596,086 - -0.5
596,209 - +2.3
597,385 - 8613 mRNA_245 0.16 -2.0
597,542 + 8613 mRNA_245 0.26 -0.3
597,694 + 8613 mRNA_245 0.35 -1.5

Or see this region's nucleotide sequence