Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_313

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8680 and 8681 are separated by 248 nucleotides8681 and 8682 are separated by 296 nucleotides mRNA_312: 8680 - K20103 DDX60 ATP-dependent RNA helicase DDX60, at 741,330 to 747,566 8680 mRNA_313: 8681 - Hypothetical Protein, at 747,815 to 749,312 8681 mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749,609 to 751,814 8682

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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748,156 - 8681 mRNA_313 0.23 +1.6
748,328 + 8681 mRNA_313 0.34 -1.3
749,060 - 8681 mRNA_313 0.83 -1.9
749,347 - -0.9
749,364 - -0.8
749,377 - -0.9
749,399 + -0.7
749,399 + -0.9
749,506 + -0.6
749,995 - 8682 mRNA_314 0.17 +2.5

Or see this region's nucleotide sequence