Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_371

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8738 and 8739 are separated by 202 nucleotides8739 and 8740 are separated by 264 nucleotides mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859,391 to 862,171 8738 mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862,374 to 864,566 8739 mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864,831 to 866,823 8740

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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861,376 + 8738 mRNA_370 0.71 -2.6
861,801 - 8738 mRNA_370 0.87 -0.4
861,806 - 8738 mRNA_370 0.87 +0.3
861,906 + -2.0
862,391 - +0.7
862,676 - 8739 mRNA_371 0.14 -1.7
862,771 - 8739 mRNA_371 0.18 +0.7
862,861 - 8739 mRNA_371 0.22 -0.6
863,131 + 8739 mRNA_371 0.35 +0.2
863,321 - 8739 mRNA_371 0.43 -1.0
863,359 + 8739 mRNA_371 0.45 -0.7
863,458 + 8739 mRNA_371 0.49 -0.4
863,461 - 8739 mRNA_371 0.50 -0.2
863,721 + 8739 mRNA_371 0.61 -0.8
864,094 - 8739 mRNA_371 0.78 -0.3
864,144 - 8739 mRNA_371 0.81 -0.2
864,151 - 8739 mRNA_371 0.81 -0.3
864,304 - 8739 mRNA_371 0.88 -0.5
864,317 + 8739 mRNA_371 0.89 -2.4
864,327 + 8739 mRNA_371 0.89 -2.2
864,449 - +0.3
864,571 + +2.0
864,592 - -3.2
864,617 - +1.2
864,644 + -0.6
864,743 - -0.3
865,059 + 8740 mRNA_372 0.11 -1.9
865,185 - 8740 mRNA_372 0.18 -0.6
865,192 + 8740 mRNA_372 0.18 +0.1
865,222 - 8740 mRNA_372 0.20 +0.8
865,530 + 8740 mRNA_372 0.35 -0.3

Or see this region's nucleotide sequence