Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_465

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8832 and 8833 are separated by 72 nucleotides8833 and 8834 are separated by 332 nucleotides mRNA_464: 8832 - Hypothetical Protein, at 1,077,670 to 1,079,089 8832 mRNA_465: 8833 - K10858 PMS2 DNA mismatch repair protein PMS2, at 1,079,162 to 1,083,033 8833 mRNA_466: 8834 - Hypothetical Protein, at 1,083,366 to 1,084,523 8834

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,078,541 + 8832 mRNA_464 0.61 +0.3
1,078,719 - 8832 mRNA_464 0.74 -0.5
1,078,749 + 8832 mRNA_464 0.76 +0.6
1,079,318 - +1.0
1,079,338 + -2.6
1,079,494 - -0.3
1,079,603 + 8833 mRNA_465 0.11 -1.0
1,080,200 - 8833 mRNA_465 0.27 -2.0
1,080,204 - 8833 mRNA_465 0.27 -1.3
1,080,968 + 8833 mRNA_465 0.47 +1.6
1,081,037 - 8833 mRNA_465 0.48 +0.4
1,081,221 + 8833 mRNA_465 0.53 -0.0
1,081,301 - 8833 mRNA_465 0.55 +0.8
1,081,634 - 8833 mRNA_465 0.64 -0.7
1,081,644 - 8833 mRNA_465 0.64 +0.0
1,081,659 - 8833 mRNA_465 0.64 -2.2
1,081,779 - 8833 mRNA_465 0.68 +2.3
1,081,973 - 8833 mRNA_465 0.73 -1.0
1,082,555 - 8833 mRNA_465 0.88 -0.4
1,082,608 + 8833 mRNA_465 0.89 -0.5
1,082,633 + 8833 mRNA_465 0.90 -0.1
1,082,787 - -1.2
1,082,796 - -3.1
1,082,799 - -1.2
1,082,804 + -0.8
1,082,837 - +0.9
1,082,954 - -1.2
1,082,955 + -0.3
1,082,958 - -0.4
1,083,402 + +0.3
1,083,499 + 8834 mRNA_466 0.11 -1.5
1,083,554 - 8834 mRNA_466 0.16 +0.5
1,083,834 - 8834 mRNA_466 0.40 -0.6
1,083,838 + 8834 mRNA_466 0.41 -2.0
1,083,967 + 8834 mRNA_466 0.52 +0.8

Or see this region's nucleotide sequence