Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_471

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8838 and 8839 are separated by 331 nucleotides8839 and 8840 are separated by 48 nucleotides mRNA_470: 8838 - KOG0714 Molecular chaperone (DnaJ superfamily), at 1,094,157 to 1,095,851 8838 mRNA_471: 8839 - Hypothetical Protein, at 1,096,183 to 1,097,842 8839 mRNA_472: 8840 - KOG0987 DNA helicase PIF1/RRM3, at 1,097,891 to 1,099,308 8840

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,095,248 - 8838 mRNA_470 0.64 -1.8
1,095,481 + 8838 mRNA_470 0.78 -0.7
1,095,486 - 8838 mRNA_470 0.78 +1.1
1,095,686 - -1.4
1,095,966 + -0.0
1,096,129 - -1.0
1,096,208 - -0.9
1,096,414 - 8839 mRNA_471 0.14 -0.9
1,096,845 + 8839 mRNA_471 0.40 +0.5
1,097,099 - 8839 mRNA_471 0.55 -1.8
1,097,462 + 8839 mRNA_471 0.77 +0.0
1,097,741 - +1.7
1,097,904 + +0.7

Or see this region's nucleotide sequence