Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_480

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8847 and 8848 are separated by 527 nucleotides8848 and 8849 are separated by 249 nucleotides mRNA_479: 8847 - K17302 COPB2, SEC27 coatomer subunit beta', at 1,114,132 to 1,117,214 8847 mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1,117,742 to 1,121,401 8848 mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1,121,651 to 1,124,733 8849

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,117,384 - +0.2
1,117,534 - +0.3
1,117,539 - -1.5
1,117,557 + +1.2
1,117,564 + +1.6
1,117,573 - +0.0
1,117,584 + -0.1
1,117,587 + +0.6
1,117,701 - +0.4
1,117,719 + -0.2
1,117,720 + -2.0
1,117,739 - +0.4
1,117,746 + -0.2
1,117,853 - -0.8
1,117,855 - -0.2
1,117,866 + +0.1
1,117,868 - +2.8
1,117,881 + -0.9
1,117,885 + +0.6
1,118,026 + -0.3
1,118,030 + -0.5
1,118,043 + -0.6
1,118,058 + -1.2
1,118,063 + +1.5
1,118,351 - 8848 mRNA_480 0.17 -0.2
1,118,481 + 8848 mRNA_480 0.20 +1.2
1,118,807 + 8848 mRNA_480 0.29 +1.8
1,118,931 - 8848 mRNA_480 0.32 -0.8
1,119,067 + 8848 mRNA_480 0.36 -0.2
1,119,241 - 8848 mRNA_480 0.41 -0.2
1,120,193 + 8848 mRNA_480 0.67 -0.3
1,120,231 - 8848 mRNA_480 0.68 -1.9
1,120,267 + 8848 mRNA_480 0.69 +0.3
1,120,401 - 8848 mRNA_480 0.73 +1.0
1,120,407 + 8848 mRNA_480 0.73 +0.6
1,121,408 + +0.0
1,121,425 + -0.0
1,122,009 + 8849 mRNA_481 0.12 +0.0

Or see this region's nucleotide sequence