Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_580

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8947 and 8948 are separated by 201 nucleotides8948 and 8949 are separated by 430 nucleotides mRNA_579: 8947 - K10686 UBE1C, UBA3 ubiquitin-activating enzyme E1 C, at 1,386,772 to 1,388,532 8947 mRNA_580: 8948 - Hypothetical Protein, at 1,388,734 to 1,389,540 8948 mRNA_581: 8949 - Interpro ERCC4 domain 0, at 1,389,971 to 1,392,481 8949

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,388,566 - -1.1
1,388,592 - -1.3
1,388,739 - -0.1
1,388,875 - 8948 mRNA_580 0.17 -0.1
1,388,996 + 8948 mRNA_580 0.32 -1.3
1,389,002 - 8948 mRNA_580 0.33 -0.4
1,389,004 - 8948 mRNA_580 0.33 +0.2
1,389,010 + 8948 mRNA_580 0.34 +0.6
1,389,011 + 8948 mRNA_580 0.34 -0.7
1,389,316 + 8948 mRNA_580 0.72 +0.4
1,389,319 + 8948 mRNA_580 0.72 +0.2
1,389,384 - 8948 mRNA_580 0.81 -0.3
1,389,429 + 8948 mRNA_580 0.86 -0.6
1,389,453 - 8948 mRNA_580 0.89 +0.6
1,389,461 - -0.9
1,389,571 - +1.8
1,389,600 + -2.6
1,389,753 - +0.1
1,390,013 + -3.5
1,390,041 + -0.6
1,390,045 - +0.1
1,390,183 - -1.6
1,390,184 + +0.9
1,390,329 - 8949 mRNA_581 0.14 -0.0

Or see this region's nucleotide sequence