Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_588

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8955 and 8956 are separated by 802 nucleotides mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590 8955 mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614 8956

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,405,584 - -0.5
1,405,596 - -1.2
1,406,318 + -1.0
1,406,337 + -1.6
1,406,459 - -1.0
1,406,477 - -0.7
1,406,487 + -2.2
1,406,619 - 8956 mRNA_588 0.10 -1.0
1,406,621 - 8956 mRNA_588 0.10 +0.1
1,406,625 + 8956 mRNA_588 0.10 +0.9
1,406,759 - 8956 mRNA_588 0.16 +0.9
1,406,771 - 8956 mRNA_588 0.17 +0.1
1,406,776 + 8956 mRNA_588 0.17 -0.5
1,406,779 - 8956 mRNA_588 0.17 +0.2
1,406,780 - 8956 mRNA_588 0.17 +1.4
1,407,055 - 8956 mRNA_588 0.30 -3.0
1,407,778 - 8956 mRNA_588 0.62 -0.9
1,407,939 + 8956 mRNA_588 0.70 -0.6
1,408,062 + 8956 mRNA_588 0.75 -1.5
1,408,830 + +0.1
1,409,243 - -0.6
1,409,393 + -0.8

Or see this region's nucleotide sequence