Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_642

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9009 and 9010 are separated by 338 nucleotides9010 and 9011 are separated by 169 nucleotides mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1,538,392 to 1,544,328 9009 mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,544,667 to 1,546,033 9010 mRNA_643: 9011 - K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35, at 1,546,203 to 1,548,129 9011

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,543,979 - +0.6
1,544,004 - -2.5
1,544,290 - -2.1
1,544,303 + -0.2
1,544,317 + -0.7
1,544,333 - -0.5
1,544,412 - -0.9
1,544,545 + +1.6
1,544,583 - +0.3
1,544,709 + +0.6
1,545,922 + -1.0
1,545,936 - -1.7
1,545,939 - -1.1
1,546,069 - -1.9
1,546,091 - -0.8
1,546,094 + +0.0
1,546,102 + +0.3
1,546,106 - -1.9
1,546,110 + -1.0
1,546,112 + -0.7
1,546,119 + -0.9
1,546,125 - -0.8
1,546,126 + -1.2
1,546,242 + -2.0
1,546,249 + +0.4
1,546,397 - 9011 mRNA_643 0.10 -0.3
1,546,685 + 9011 mRNA_643 0.25 -0.2

Or see this region's nucleotide sequence